Lauber, M.A.; Reilly, J. P., Novel amidinating cross-linker for facilitating analyses of protein structures and interactions. Analytical Chemistry 2010, 82 (18), 7736-7743.
Running, W. E.; Reilly, J. P., Variation of the chemical reactivity of Thermus thermophilus HB8 ribosomal proteins as a function of pH. Proteomics 2010, 10 (20), 3669-3687.
Zhang, L.; Reilly, J. P., Peptide de Novo Sequencing Using 157 nm Photodissociation in a Tandem Time-of-Flight Mass Spectrometer. Analytical Chemistry 2010, 82 (3), 898-908.
Ravipaty, S.; Reilly, J. P., Comprehensive characterization of methicillin-resistant Staphylococcus aureus subsp. aureus COL secretome by two-dimensional liquid chromatography and mass spectrometry. Molecular and Cellular Proteomics 2010, 9 (9), 1898-1919.
Parthasarathi, R.; He, Y.; Reilly, J. P.; Raghavachari, K., New Insights into the Vacuum UV Photodissociation of Peptides. Journal of the American Chemical Society 2010, 132 (5), 1606-1610.
Kim, T.-Y.; Valentine, S. J.; Clemmer, D. E.; Reilly, J. P., Gas-Phase Conformation-Specific Photofragmentation of Proline-Containing Peptide Ions. Journal of the American Society for Mass Spectrometry 2010, 21 (8), 1455-1465.
Bohrer, B. C.; Li, Y. F.; Reilly, J. P.; Clemmer, D. E.; Di Marchi, R. D.; Radivojac, P.; Tang, H.; Arnold, R. J., Combinatorial Libraries of Synthetic Peptides as a Model for Shotgun Proteomics. Analytical Chemistry 2010, 82 (15), 6559-6568.
Zhang, L.; Reilly James, P., De novo sequencing of tryptic peptides derived from Deinococcus radiodurans ribosomal proteins using 157 nm photodissociation MALDI TOF/TOF mass spectrometry. Journal of proteome research 2010, 9 (6), 3025-34.
Reilly James, P., Ultraviolet photofragmentation of biomolecular ions. Mass spectrometry reviews 2009, 28 (3), 425-47.
Lauber, M. A.; Running, W. E.; Reilly, J. P., B. subtilis Ribosomal Proteins: Structural Homology and Post-Translational Modifications. J. Proteome Res. 2009, 8 (9), 4193-4206.
Liu, X.; Reilly, J. P., Correlating the Chemical Modification of Escherichia coli Ribosomal Proteins with Crystal Structure Data. J. Proteome Res. 2009, 8 (10), 4466-4478.
Kim, T.-Y.; Schwartz, J. C.; Reilly, J. P., Development of a Linear Ion Trap/Orthogonal-Time-of-Flight Mass Spectrometer for Time-Dependent Observation of Product Ions by Ultraviolet Photodissociation of Peptide Ions. Analytical Chemistry 2009, 81 (21), 8809-8817.
Zhang, L.; Reilly, J. P., Extracting Both Peptide Sequence and Glycan Structural Information by 157 nm Photodissociation of N-Linked Glycopeptides. J. Proteome Res. 2009, 8 (2), 734-742.
Zhang, L.; Reilly, J. P., Peptide photodissociation with 157 nm light in a commercial tandem time-of-flight mass spectrometer. Analytical Chemistry 2009, 81 (18), 7829-7838.
Zhang, L.; Reilly, J. P., Radical-Driven Dissociation of Odd-Electron Peptide Radical Ions Produced in 157 nm Photodissociation. Journal of the American Society for Mass Spectrometry 2009, 20 (7), 1378-1390.
Running, W. E.; Reilly, J. P., Ribosomal Proteins of Deinococcus radiodurans: Their Solvent Accessibility and Reactivity. J. Proteome Res. 2009, 8 (3), 1228-1246.
Kim, T.-Y.; Reilly, J. P., Time-Resolved Observation of Product Ions Generated by 157 nm Photodissociation of Singly Protonated Phosphopeptides. Journal of the American Society for Mass Spectrometry 2009, 20 (12), 2334-2341.
Yi He and J.P. Reilly, Does a charge tag really provide a fixed charge?, Angewandte Chemie., 120 2497-99.
A. Devakumar D.K. O'Dell, J. M. Walker and J.P. Reilly, Structural analysis of leukotriene C4 isomers using collisional activation and VUV photodissociation, J. Am. Soc. Mass Spectrom., , 19 14-26.
L. Zhang and J.P. Reilly, Use of 157 nm photodissociation to probe structures of y- and b-type ions produced in collision induced dissociation of peptide ions, J. Am. Soc. Mass Spectrom., 19 (5) 695-702.